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Syllabus
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548 Resources
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Instructor |
Schedule of Term Project Presentations:
2004 students: we have to fill out our presentations schedule for this
year. Click on the presentation subject for a relevant link, if
available. The schedule and topics from last year are available here. These initial time periods
correspond to the final exam periods assigned to 547 (Thursday) and
548 (Tuesday). We may need to schedule other times as well, though I
think that would at most need to be one hour, the replacement hour for
the class period I was ill. Please see me ASAP concerning your time
desired and teh references you wish to post so students can see what
you will discuss beforehand. If you are working on a new project, you
are still required to post some background reading that would be
helpful for your colleagues. All students are required to distributew
the notes or slides of their presentations before the presentation,
for the convenience of the audience. Unless otherwise specified, this
will constitute your written submission in support of your presentation.
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Tuesday,
April 27 |
3:30 - 5 PM |
4096 East Hall
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Arvind Rao and
Prabhjot Singh
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Transmembrane proteins:
background and prediction
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Chen and Rost, State of the art in membrane protein prediction, Applied Bioinformatics 1 (2002), 21-35.
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Will Gifford |
Distribution of Protein Families Among Various Folds |
S.Govindarajan, R.Recabarren and R.A.Goldstein, Estimating the
total number of protein folds, Proteins 35 (1999), 408-414. |
Thursday,
April 29 |
3:30 - 6 PM |
1084 East Hall
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Jayson Falkner |
Protein identification
based on tandem mass spectrometry data |
Craig and Beavis, TANDEM: matching proteins with tandem mass spectra, Bioinformatics, early online publ.
Eriksson and Fenyo, Probity: a proteinidentification algorithm with accurate
assignment of the statistical significance of the results, J. Proteome Res., 3 (2004), 32 - 36. |
Hao Chen,
Raj Nambiar,
Crystal Pang |
DNA models and single molecule tests |
Bockelmann, et al., Unzipping DNA with optical tweezers:
high sequence sensitivity and force flips, Biophys. J.
82 (2002), 1537-1553.
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| Lydia Bilinsky |
Alternative PHX measures |
Karlin and Mra'zek, Predicted highly expressed genes of diverse prokaryotic genomes, J. Bact. 182 (2000), 5238-5250. |
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Andy Stein
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Finding community structure in networks with
hierarchical clustering algorithms
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M. Newman, Detecting community structure in networks, preprint. Secs. I and II.
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Thursday,
April 29 |
6 - 6:30 PM |
B-743 East Hall: PHX Run!
NB: Not our Lab room, but next door (construction).
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Thursday,
April 29 |
6:30 PM - ? |
TBA: End of Term Dinner!
Warning! DB has Dept Commiment!
We WON'T be able to go after 6:30.
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