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Syllabus
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Project
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Instructor |
Schedule of Term Project Presentations:
These are the presentations form the class in April, 2003. They are
left here for the information of 2004 students until we start filling
out our own schedule for this year. Click on the presentation subject
for a relevant link, if available.
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Friday, April 4
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Guo Li and
Dongxiao Zhu
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M. Buck, et al., The bacterial enhancer-dependent
sigma-54 transcription factor, J. of
Bacteriology 182 (2000), 4129-4136.
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Monday, April 7
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Rohit Kulkarni
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S.Govindarajan, R.Recabarren and R.A.Goldstein, Estimating the total
number of protein folds,
Proteins
35 (1999), 408-414.
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Monday, April 7
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Shankar Subramanian and Deb Williams
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W.Fairbrother, R.Yeh, P.Sharp and C.Burge, Predictive identification
of exonic splicing enhancers in human genes, Science
297 (2002),1007-1013.
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Wednesday, April 9
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Traci Ruthkoski and
Mobin Tawakkul
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L.J. Jensen, et al., Prediction of human protein function
from post-translational modifications and localization features,
J. Mol. Biol., 319 (2002), 1257-1265.
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Wednesday,
April 9
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Nicole Batty and
Paveena Lertampaiporn
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S.Karlin and S.F. Altschul, Methods for assessing the statistical
significance of molecular sequence features by using general scoring
schemes,
Proc. Nat. Acad. Sci. USA, 87 (1990), 2264-2268.
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Friday,
April 11
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Yan Li
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Marc S. Halfon et al., Computation-Based Discovery of Related
Transcriptional Regulatory Modules and Motifs Using an Experimentally
Validated Combinatorial Model. Genome
Research 12 (2002), 1019-1028.
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Friday,
April 11
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Mark Benson and
Chris Grulke
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E.Rivas
and S.R.Eddy, Secondary structure alone is generally not statistically significant
for the detection of noncoding RNAs, Bioinformatics
16(2000),
583-605.
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Monday,
April 14
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Jenny Cui
and Yi Yu
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A new BLAST-type searcher.
S.Altschul, et al., Basic Local Alignment Search Tool,
J. Mol. Bio. 215(1990), 403-410.
S. Altschul, et al., Gapped BLAST and Psi-BLAST, Nucl. Acids Res. 25
(1997), 3389-3402.
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